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VNTR clustering in relation to the M. tuberculosis population References
1. Small PM, Hopewell PC, Singh SP, Paz A, Parsonnet J, Ruston DC, Schecter GF, Daley CL, Schoolnik GK. 1994. The epidemiology of tuberculosis in San Francisco. A population-based study using conventional and molecular methods. N. Engl. J. Med. 330:1703–1709.
2. Jasmer RM, Hahn JA, Small PM, Daley CL, Behr MA, Moss AR, Creasman JM, Schecter GF, Paz EA, Hopewell
PC. 1999. A molecular epidemiologic analysis of tuberculosis trends in San Francisco, 1991-1997. Ann. Intern.
Med. 130:971–978. 2
3. Glynn JR, Bauer J, de Boer AS, Borgdorff MW, Fine PE, Godfrey-Faussett P, Vynnycky E. 1999. Interpreting DNA fingerprint clusters of Mycobacterium tuberculosis. Int. J. Tuberc. Lung Dis. 3:1055–1060.
4. Ellis BA, Crawford JT, Braden CR, McNabb SJ, Moore M, Kammerer S. 2002. Molecular epidemiology of tuberculosis in a sentinel surveillance population. Emerg. Infect. Dis. 8:1197–1209.
5. Braden CR, Templeton GL, Cave MD, Valway S, Onorato IM, Castro KG, Moers D, Yang Z, Stead WW, Bates JH. 1997. Interpretation of restriction fragment length polymorphism analysis of Mycobacterium tuberculosis isolates from a state with a large rural population. J. Infect. Dis. 175:1446 –1452.
6. Schürch AC, Kremer K, Daviena O, Kiers A, Boeree MJ, Siezen RJ, van Soolingen D. 2010. High resolution typing by integration of genome sequencing data in a large tuberculosis cluster. J. Clin. Microbiol. 48:3403–3406.
7. Diel R, Rüsch-Gerdes S, Niemann S. 2004. Molecular epidemiology of tuberculosis among immigrants in Hamburg, Germany. J. Clin. Microbiol. 42:2952–2960.
8. Iñigo J, García de Viedma D, Arce A, Palenque E, Alonso Rodríguez N, Rodríguez E, Ruiz Serrano MJ, Andrés S, Bouza E, Chaves F. 2007. Analysis of changes in recent tuberculosis transmission patterns after a sharp increase in immigration. J. Clin. Microbiol. 45:63– 69.
9. van Soolingen D, Qian L, de Haas PE, Douglas JT, Traore H, Portaels F, Qing HZ, Enkhsaikan D, Nymadawa P, van Embden JD. 1995. Predominance of a single genotype of Mycobacterium tuberculosis in countries of east Asia. J. Clin. Microbiol. 33:3234 –3238.
10. Hirsh AE, Tsolaki AG, DeRiemer K, Feldman MW, Small PM. 2004. Stable association between strains of Mycobacterium tuberculosis and their human host populations. Proc. Natl. Acad. Sci. U. S. A. 101:4871–4876.
11. Cardoso Oelemann M, Gomes HM, Willery E, Possuelo L, Batista Lima KV, Allix-Béguec C, Locht C, Goguet de la Salmonière YO, Gutierrez MC, Suffys P, Supply P. 2011. The forest behind the tree: phylogenetic exploration of a dominant Mycobacterium tuberculosis strain lineage from a high tuberculosis burden country. PLoS One 6:e18256. doi:10.1371/journal.pone.0018256.
12. Lillebaek T, Andersen AB, Bauer J, Dirksen A, Glismann S, de Haas P, Kok-Jensen A. 2001. Risk of Mycobacterium tuberculosis transmission in a low-incidence country due to immigration from high-incidence areas. J.Clin. Microbiol. 39:855– 861.
13. Supply P, Allix C, Lesjean S, Cardoso-Oelemann M, Rüsch-Gerdes S, Willery E, Savine E, de Haas P, van Deutekom H, Roring S, Bifani P, Kurepina N, Kreiswirth B, Sola C, Rastogi N, Vatin V, Gutierrez MC, Fauville M, Niemann S, Skuce R, Kremer K, Locht C, van Soolingen D. 2006. Proposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosis. J. Clin. Microbiol. 44:4498–4510.
14. van Embden JD, Cave MD, Crawford JT, Dale JW, Eisenach KD, Gicquel B, Hermans P, Martin C, McAdam R, Shinnick TM, Small PM. 1993. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J. Clin. Microbiol. 31:406–409.
15. Weniger T, Krawczyk J, Supply P, Niemann S, Harmsen D. 2010. MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria. Nucleic Acids Res. 38:W326–W331.
16. Allix-Béguec C, Fauville-Dufaux M, Supply P. 2008. Three-year population- based evaluation of standardized mycobacterial interspersed repetitive- unit-variable-number tandem-repeat typing of Mycobacterium tuberculosis. J. Clin. Microbiol. 46:1398 –1406.
17. Bauer J, Yang Z, Poulsen S, Andersen AB. 1998. Results from 5 years of nationwide DNA fingerprinting of Mycobacterium tuberculosis complex isolates in a country with a low incidence of M. tuberculosis infection. J. Clin. Microbiol. 36:305–308.
18. van Soolingen D, Borgdorff MW, de Haas PE, Sebek MM, Veen J, Dessens M, Kremer K, van Embden JD. 1999. Molecular epidemiology of tuberculosis in the Netherlands: a nationwide study from 1993 through 1997. J. Infect. Dis. 180:726 –736.
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